soprano.scripts.phylogen

A script that allows to run a phylogenetic analysis as a command-line tool

Functions

genomes2png(aC, pC, outf[, dpi])	Produce a PNG plot of a series of genomes vectors
tree2json(aC, pC[, w, h])	Produce a dictionary representation of a Scipy cluster tree object suitable to be saved as JSON

soprano.scripts.phylogen.genomes2png(aC, pC, outf, dpi=90)

Produce a PNG plot of a series of genomes vectors

soprano.scripts.phylogen.tree2json(aC, pC, w=500, h=500)

Produce a dictionary representation of a Scipy cluster tree object suitable to be saved as JSON